不同致病力青枯雷尔氏菌胁迫对番茄根际细菌群落组成的影响

    Effects of Ralstonia solanacearum Strains with Different Pathogenicity on the Rhizosphere Bacterial Community Composition of Tomato

    • 摘要: 植物青枯病是由青枯雷尔氏菌Ralstonia solanacearum引起的一种毁灭性土传病害,利用青枯雷尔氏菌无致病力菌株进行生物防治是预防和控制青枯病的关键策略之一。以番茄Solanum lycopersicum与青枯雷尔氏菌R. solanacearum互作系统为研究对象,设立了两个接菌处理组,分别接种无致病力菌株FJAT-1458与强致病力菌株FJAT-91,同时以未接菌的番茄植株作为空白对照组(CK),分析不同致病力青枯雷尔氏菌胁迫对番茄根际细菌群落组成的影响。采用Illumina MiSeq高通量测序技术对3组共15份根际土壤样本进行检测,共获得1 301 685条高质量序列,注释为6 989个操作分类单元(OTU),涵盖38个门、98个纲、271个目、421个科和770个属。其中,变形菌门Proteobacteria、疣微菌门Verrucomicrobiota、拟杆菌门Bacteroidota、粘球菌门Myxococcota、酸杆菌门Acidobacteriota和浮霉菌门Planctomycetota等是番茄根际土壤细菌优势菌门。层次聚类Hierarchical clustering分析表明,强致病力菌株FJAT-91胁迫显著改变了番茄根际细菌群落的组成和结构,而无致病力菌株FJAT-1458处理组与CK的细菌群落构成更为相似。进一步分析根际细菌丰度和多样性指数发现,在强致病力菌株FJAT-91的胁迫下,番茄根际细菌群落的Shannon指数与CK相比极显著的下降(P<0.01),表明根际细菌群落的多样性出现退化;而在无致病力菌株FJAT-1458的胁迫下,Chao1指数和Shannon指数与CK相比略有提高(P>0.05),表明根际细菌群落稳定性和多样性得到了一定程度增强;在不同致病力青枯菌胁迫下,根际细菌多样性差异显著,无致病力菌株FJAT-1458处理组的Chao1指数显著高于强致病力菌株FJAT-91处理组(P<0.05),Shannon指数则极显著高于FJAT-91处理组(P<0.01)。通过线性判别分析(LEfSe)分析,进一步明确了根际细菌群落中的差异指示物种。这些结果初步揭示了青枯雷尔氏菌强致病力菌株与无致病力菌株对番茄根际土壤中细菌群落的多样性和分布特征的影响。

       

      Abstract: Plant bacterial wilt is a devastating soil-borne disease caused by Ralstonia solanacearum. The use of Ralstonia solanacearum avirulent strains for the biological control is one of the key strategies to prevent and control the bacterial wilt. By taking the interaction system between Solanum lycopersicum and Ralstonia solanacearum as the research object, two inoculation treatment groups were set up, which were inoculated with the avirulent strain FJAT-1458 and the virulent strain FJAT-91, respectively. At the same time, the uninoculated tomato plants were used as the blank control group (CK), in order to analyze the effects of Ralstonia solanacearum stress with different pathogenicity on the rhizosphere bacterial community composition of tomato. The Illumina MiSeq high-throughput sequencing technology was used to detect 15 rhizosphere soil samples in the three groups. A total of 1 301 685 high-quality sequences were obtained and annotated as 6 989 operational taxonomic units (OTUs), covering 38 phyla, 98 classes, 271 orders, 421 families and 770 genera. Among them, Proteobacteria, Verrucomicrobiota, Bacteroidota, Myxococcota, Acidobacteriota and Planctomycetota were the dominant bacterial phyla in the rhizosphere soil of tomato plants. The hierarchical clustering analysis showed that the composition and structure of the bacterial community in the rhizosphere of tomato were significantly changed by the stress of the virulent strain FJAT-91, while the bacterial community composition of the non-pathogenic strain FJAT-1458 treatment group was more similar to that of the control group. The further analysis on the abundance and diversity index of rhizosphere bacteria showed that under the stress of virulent strain FJAT-91, the Shannon index of the rhizosphere bacterial community in tomato plants was significantly lower than that in the control group (P<0.01), indicating that the diversity of rhizosphere bacterial community was degraded. In contrast, under the stress of avirulent strain FJAT-1458, both the Chao1 index and Shannon index were slightly higher than those in the control group (P>0.05), indicating that the stability and diversity of rhizosphere bacterial community were enhanced to a certain extent. Under the stress of Ralstonia solanacearum with different pathogenicity, there were significant differences in the diversity of rhizosphere bacteria. The Chao1 index of the avirulent strain FJAT-1458 treatment group was significantly higher than that of the virulent strain FJAT-91 treatment group (P<0.05), and the Shannon index was significantly higher than that of the FJAT-91 treatment group (P<0.01). Through the linear discriminant analysis (LEfSe), the differential indicator species in the rhizosphere bacterial community were further clarified. These results preliminarily revealed the effects of virulent and avirulent strains of Ralstonia solanacearum on the diversity and distribution characteristics of bacterial communities in the rhizosphere soil of tomato plants.

       

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