灵芝UDP-GlcDH基因的cDNA克隆及生物信息学分析

    cDNA Cloning and Bioinformatics Analysis of UDP-GlcDH Gene from Ganoderma lucidum

    • 摘要: 尿苷二磷酸葡萄糖脱氢酶(UDP glucose dehydrogenase,UDP-GlcDH)可将UDP葡萄糖催化生成多糖形成必需的前体物质UDP葡萄糖醛酸。以黄曲霉的UDP-GlcDH基因序列为模板,采用电子克隆的方法,搜索灵芝EST文库,拼接获得灵芝UDP-GlcDH基因的cDNA序列,并通过RT-PCR试验进行验证。采用生物信息学方法对UDP-GlcDH基因进行分析,表明该cDNA序列长度为1 591 bp,其中包含能编码471个氨基酸的序列,分子量为51.8 kD,PI为6.29,存在于内质网膜中,与污叉丝孔菌和云芝等真菌中的UDP-GlcDH基因编码的氨基酸序列高度同源。

       

      Abstract: UDP glucose dehydrogenase (UDP-GlcDH) can catalyze UDP glucose to UDP glucuronic acid, which is an essential precursor for the formation of polysaccharide. The UDP-GlcDH gene sequence of Aspergillus flavus was used as the template, and the cDNA sequence of UDP-GlcDH gene from Ganoderma lucidum was obtained by searching the EST library of Ganoderma lucidum through the electronic cloning method, and then verified by using the RT-PCR testing. The bioinformatics method was used to analyze the UDP-GlcDH gene, showing that the cDNA sequence was 1 591 bp in length, which contained 471 amino acid sequences with the molecular weight of 51.8 kD and PI of 6.29. The UDP-GlcDH gene was found in the endoplasmic reticulum, which was highly homologous to the amino acid sequence encoded by UDP-GlcDH gene in the fungi such as Dichomitus squalens and Coriolus versicolor.

       

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