甜菜GRAS基因家族全基因组鉴定与表达分析

    Genome-wide Identification and Expression Analysis of the GRAS Gene Family in Beta vulgaris

    • 摘要: 为了探究甜菜GRAS家族成员组成及其在生长发育与逆境胁迫响应中的调控功能,采用生物信息学方法对甜菜GRAS家族进行鉴定与表达分析,探讨其编码蛋白的理化性质、亚细胞定位、保守结构、染色体定位、启动子顺式作用元件等进化关系,并结合甜菜干旱转录组分析甜菜GRAS在不同组织的表达模式。结果表明:在甜菜基因组中共鉴定出38个GRAS基因,可划分为9个亚组,分布在8条不同的染色体上;甜菜GRAS编码蛋白质的氨基酸长度为280~795个,多数为亲水性蛋白,主要定位于细胞核。启动子顺式作用元件分析显示,GRAS基因成员富含激素应答元件及胁迫响应元件。通过对甜菜干旱胁迫转录组分析发现,干旱下BvGRAS28显著上调表达,可能正向调控甜菜抗旱响应;BvGRAS9BvGRAS31则显著下调,说明该家族基因在干旱胁迫下存在功能分化。筛选10个候选BvGRAS基因进行qPCR验证,结果显示这些基因在甜菜中具有明显组织特异性。综上所述,该研究结果初步揭示了GRAS基因家族在甜菜生长发育与逆境适应中的潜在功能,为后续基因功能验证及甜菜抗逆育种提供了参考依据。

       

      Abstract: In order to explore the composition of the GRAS family members in sugar beet (Beta vulgaris) and their regulatory functions in the growth and development and stress response, the GRAS gene family was identified and its expression was profiled by using the bioinformatic methods. Then, the evolutionary relationships such as physicochemical properties, subcellular localization, conserved structure, chromosome localization, and promoter cis-acting elements of the encoded protein were discussed. And the expression pattern of GRAS in different tissues of sugar beet was analyzed by combining the drought transcriptome of sugar beet. The results showed that 38 GRAS genes were identified in the sugar beet genome, which could be classified into 9 subgroups and distributed across 8 different chromosomes. The encoded proteins ranged from 280 to 795 amino acids in length, with most being hydrophilic and predicted to localize primarily to the nucleus. The promoter cis-acting element analysis showed that GRAS gene members were enriched in hormone-responsive and stress response elements. Through the transcriptomic analysis of sugar beet under drought stress, it was found that the expression of BvGRAS28 was significantly up-regulated under drought, which may positively regulate the drought resistance response of sugar beet. However, BvGRAS9 and BvGRAS31 were significantly down-regulated, indicating that the family genes had functional differentiation under drought stress conditions. Ten candidate BvGRAS genes were screened for qPCR verification, and the results showed that these genes had obvious tissue specificity in sugar beet. In summary, the results of this study preliminarily revealed the potential function of the GRAS gene gene family in the growth and development and stress adaptation of sugar beet, which provided a reference for subsequent gene function verification and stress resistance breeding of sugar beet.

       

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