甜菜GRAS基因家族全基因组鉴定与表达分析

    Genome-wide Identification and Expression Analysis of the GRAS Gene Family in Beta vulgaris

    • 摘要: 为了探究甜菜GRAS家族成员组成及其在生长发育与逆境胁迫响应中的调控功能,采用生物信息学方法对甜菜GRAS家族进行鉴定与表达分析,探讨其编码蛋白的理化性质、亚细胞定位、保守结构、染色体定位、启动子顺式作用元件等进化关系,并结合甜菜干旱转录组分析甜菜GRAS在不同组织的表达模式。结果表明:在甜菜基因组中共鉴定出38个GRAS基因,可划分为9个亚组,分布在8条不同的染色体上;甜菜GRAS编码蛋白质的氨基酸长度为280~795个,多数为亲水性蛋白,主要定位于细胞核。启动子顺式作用元件分析显示,GRAS基因成员富含激素应答元件及胁迫响应元件。通过对甜菜干旱胁迫转录组分析发现,干旱下BvGRAS28显著上调表达,可能正向调控甜菜抗旱响应;BvGRAS9BvGRAS31则显著下调,说明该家族基因在干旱胁迫下存在功能分化。筛选10个候选BvGRAS基因进行qPCR验证,结果显示这些基因在甜菜中具有明显组织特异性。综上所述,该研究结果初步揭示了GRAS基因家族在甜菜生长发育与逆境适应中的潜在功能,为后续基因功能验证及甜菜抗逆育种提供了参考依据。

       

      Abstract: To investigate the composition of the GRAS family in sugar beet(Beta vulgaris)and its regulatory functions in growth, development, and stress response, the GRAS gene family was identified and its expression was profiled using bioinformatic methods. Analyses were conducted on the physicochemical properties, subcellular localization, conserved domains, chromosomal distribution, and promoter cis-acting elements of the encoded proteins, along with their evolutionary relationships. Tissue-specific expression patterns of GRAS genes under drought conditions were further examined by integrating transcriptomic data from drought-stressed sugar beet. The results revealed that 38 GRAS genes were identified in the sugar beet genome, which were classified into nine subgroups and distributed across eight chromosomes. The encoded proteins ranged from 280 to 795 amino acids in length, with most being hydrophilic and predicted to localize primarily to the nucleus. Promoter analysis indicated that GRAS gene promoters are enriched in hormone-responsive and stress-related cis-acting elements. Transcriptomic analysis under drought stress showed that BvGRAS28 was significantly upregulated, suggesting a positive regulatory role in drought resistance, while BvGRAS9 and BvGRAS31 were significantly downregulated, indicating functional diversification among family members under drought conditions. Ten candidate BvGRAS genes were selected for qPCR validation, and the results confirmed their distinct tissue-specific expression patterns in sugar beet. In summary, this study provides preliminary insights into the potential functions of the GRAS gene family in sugar beet growth, development, and stress adaptation, offering a reference for subsequent functional validation of genes and molecular breeding for stress-resistant sugar beet.

       

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